Novel ratio-metric features enable the identification of new driver genes across cancer types
Sudhakar, M., et al. Scientific Reports
Discovering adaptation-capable biological network structures using control-theoretic approaches
Bhattacharya, P., Raman, K., Tangirala, A. PLoS Computational Biology
NetGenes: A Database of Essential Genes Predicted Using Features From Interaction Networks
Senthamizhan, V., et al. Frontiers in Genetics
Sequence Neighborhoods Enable Reliable Prediction of Pathogenic Mutations in Cancer Genomes
Banerjee, S., et al. Cancers
Metagenomic-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut
Chng et al. Nature Ecology Evolution 2020
Machine Learning Applications for Mass Spectrometry-Based Metabolomics
Liebal et al. Metabolites 2020
Mycobacterium tuberculosis (Mtb) lipid–mediated lysosomal rewiring in infected macrophages modulates intracellular Mtb trafficking and survival
Sachdeva et al. Journal of Biological Chemistry 2020
Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort.
Vijayram, R., Damaraju, N., Xavier, A., Desiraju, K., Thiruvengadam, R., GARBH-ini, Rengaswamy, R., Sinha, H., Bhatnagar, S. medRxiv
Thermodynamics and folding landscapes of large proteins from a statistical mechanical model
Gopi et al. Current Research in Structural Biology
Thermodynamically Consistent Estimation of Gibbs Free Energy from Data: Data Reconciliation Approach
Salike et al. Bioinformatics
Assessment of network module identification across complex diseases
Choobdar et al. Nature Methods 2019
Adapting Community Detection Algorithms for Disease Module Identification in Heterogeneous Biological Networks
Tripathi et al. Frontiers in Genetics 2019
Network-based features enable prediction of essential genes across diverse organisms
Azhagesan et al. PLoSOne 2018
Metabolite systems profiling identifies exploitable weaknesses in retinoblastoma
Sahoo et al. FEBS Letters 2018
Systems-Level Modelling of Microbial Communities: Theory and Practice
Ravikrishnan and Raman 2018
Computational framework for exploring the interplay of diet and gut microbiota in autism
Palukuri et al., bioRxiv 2018
A systems-theoretic approach towards designing biological networks that can achieve adaptation
Bhattacharya et al. IFAC-PapersOnLine 2018
Enumerating all possible biosynthetic pathways in metabolic networks
Ravikrishnan et al. Scientific Reports 2018
Gene–gene and gene–environment interactions in complex traits in yeast
Yadav et al. Yeast 2018
Open Community Challenge Reveals Molecular Network Modules with Key Roles in Diseases
Choobdar et al. bioRxiv
A General Mechanism for the Propagation of Mutational Effects in Proteins
Rajasekaran et al. Biochemistry 2017